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Analysis of microbial community composition and diversity. ( A / B ) Species abundance bar plots of gut microbiota at the phylum and genus levels, respectively; ( C ) Comparison of Chao 1 index for gut microbiota diversity between groups; ( D ) Comparison of the Firmicutes -to- Bacteroidota ratio between groups. Data are presented as mean ± SEM; ns P > 0.05; ** P < 0.01.

Journal: Scientific Reports

Article Title: Gut microbiota-dependent protection by Lactobacillus reuteri against renal injury in brain-dead rats

doi: 10.1038/s41598-026-47230-1

Figure Lengend Snippet: Analysis of microbial community composition and diversity. ( A / B ) Species abundance bar plots of gut microbiota at the phylum and genus levels, respectively; ( C ) Comparison of Chao 1 index for gut microbiota diversity between groups; ( D ) Comparison of the Firmicutes -to- Bacteroidota ratio between groups. Data are presented as mean ± SEM; ns P > 0.05; ** P < 0.01.

Article Snippet: The microbiome data analysis was conducted by Servicebio (Wuhan, China).

Techniques: Comparison

Species-level inter-group microbiota differences and their immune-inflammatory correlations. ( A ) Differences in microbiota abundance at the species level between groups (data presented as mean ± SEM; *** P < 0.001; ** P < 0.01; * P < 0.05); ( B / C ) Correlation analysis of unclassified Muribaculaceae abundance with serum LPS concentration (simple linear regression; P < 0.05; Pearson r = 0.67; ( B ) and ileal gland CD25 + proportion (simple linear regression; P < 0.05; Pearson r = 0.58; ( C ) within the BD + L. reuteri group; ( D ) Correlation analysis of serum LPS concentration and renal CXCL2 + proportion (simple linear regression; P < 0.05; Pearson r = 0.63; ( D ) within the BD + L. reuteri group.

Journal: Scientific Reports

Article Title: Gut microbiota-dependent protection by Lactobacillus reuteri against renal injury in brain-dead rats

doi: 10.1038/s41598-026-47230-1

Figure Lengend Snippet: Species-level inter-group microbiota differences and their immune-inflammatory correlations. ( A ) Differences in microbiota abundance at the species level between groups (data presented as mean ± SEM; *** P < 0.001; ** P < 0.01; * P < 0.05); ( B / C ) Correlation analysis of unclassified Muribaculaceae abundance with serum LPS concentration (simple linear regression; P < 0.05; Pearson r = 0.67; ( B ) and ileal gland CD25 + proportion (simple linear regression; P < 0.05; Pearson r = 0.58; ( C ) within the BD + L. reuteri group; ( D ) Correlation analysis of serum LPS concentration and renal CXCL2 + proportion (simple linear regression; P < 0.05; Pearson r = 0.63; ( D ) within the BD + L. reuteri group.

Article Snippet: The microbiome data analysis was conducted by Servicebio (Wuhan, China).

Techniques: Concentration Assay

Analysis of gut microbial community composition and diversity in NS and AFS strains of Wenchang chickens. (A)Statistical analysis of gene numbers in the Venn diagram. (B) The top 10 compositions of gut microbiota at the phylum level. (C) The top 10 compositions of gut microbiota at the genus level. (D)The Simpson index at the phylum level. (E)The Shannon index at the phylum level. (F)The Simpson index at the genus level. (G)The Shannon index at the genus level. (H) PCA of the β-diversity at the phylum level. (I) PCA of the β-diversity at the genus level. * P < 0.05, ** P < 0.01. N = 6 in each group.

Journal: Poultry Science

Article Title: Antibiotic-free Wenchang chickens may promote blood levels of B vitamins by modulating the gut microbiota: An integrated analysis of cecal content metagenomics and serum metabolomics

doi: 10.1016/j.psj.2026.106506

Figure Lengend Snippet: Analysis of gut microbial community composition and diversity in NS and AFS strains of Wenchang chickens. (A)Statistical analysis of gene numbers in the Venn diagram. (B) The top 10 compositions of gut microbiota at the phylum level. (C) The top 10 compositions of gut microbiota at the genus level. (D)The Simpson index at the phylum level. (E)The Shannon index at the phylum level. (F)The Simpson index at the genus level. (G)The Shannon index at the genus level. (H) PCA of the β-diversity at the phylum level. (I) PCA of the β-diversity at the genus level. * P < 0.05, ** P < 0.01. N = 6 in each group.

Article Snippet: Cecal contents samples were sent to Novogene (Beijing, China) for microbiota analysis.

Techniques:

Differential analysis of gut microbiota between the NS and AFS strains of Wenchang chickens. (A) The LEfSe analysis of gut microbiota. (B) Cladogram indicating the phylogenetic distribution of microbiota correlated with the NS or AFS strains. (C, D) The MetaStat analysis of differential gut microbiota.

Journal: Poultry Science

Article Title: Antibiotic-free Wenchang chickens may promote blood levels of B vitamins by modulating the gut microbiota: An integrated analysis of cecal content metagenomics and serum metabolomics

doi: 10.1016/j.psj.2026.106506

Figure Lengend Snippet: Differential analysis of gut microbiota between the NS and AFS strains of Wenchang chickens. (A) The LEfSe analysis of gut microbiota. (B) Cladogram indicating the phylogenetic distribution of microbiota correlated with the NS or AFS strains. (C, D) The MetaStat analysis of differential gut microbiota.

Article Snippet: Cecal contents samples were sent to Novogene (Beijing, China) for microbiota analysis.

Techniques: